Currently I’m using Joplin with Syncthing-backed file system synchronization. I’m pretty pleased with it, as I do like tagging- and Markdown-based systems.
I plan to upgrade to server-based synchronization, but before doing that, however, I wanted to see what other people are using.
Edit: So far I see a slight favor towards Joplin and Logseq, but I totally didn’t expect (and appreciate) getting so many different answers.
Ghostwriter and syncthing. Ghostwriter really has a good focus mode that really gets me in the right spot for writing. I use Markor if I am on Android and syncthing still works there as well.